Skip to main content

Next Steps

At this point, you should have everything you need to perform downstream analysis using your favorite software packages.

If you are unsure where to start, please consider contacting one of our statisticians for data analysis support.

If you would like to perform the analysis yourself or learn more about it, we have compiled a list of helpful resources below.

Anything unclear or buggy in this tutorial? Please report it!

Resources​

  • Toolkit for single cell genomics using Seurat (highly recommended)
  • Processing, analysis, and interpretation of single-cell RNA-seq data using Azimuth
  • Single-Cell Analysis in Python using ScanPy
  • Fully-automated and ultra-fast cell-type identification using ScType
  • Teaching materials at the Harvard Chan Bioinformatics Core